ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 35.00 0.23 0.13 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 20.00 0.13 0.08 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 2222.00 84.07 8.45 100.0 B4GALT1-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 408.00 11.11 1.55 100.0 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 296.00 8.06 1.13 84.33 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 55.00 1.50 0.21 100.0 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 2.00 40.00 0.01 100.0 MIR34BHG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 16223.00 88.66 61.68 90.93 THBS3-AS1-228 lncRNA gastroesophageal sphincter (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 2.00 25.00 0.01 100.0 MIR200CHG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 1123.00 43.92 4.27 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 267.00 10.44 1.02 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 22.00 0.86 0.08 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 119.00 4.65 0.45 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 1.00 100.00 0.00 100.0 MEG8-261 lncRNA gastroesophageal sphincter (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 192.00 10.70 0.73 100.0 NR2F2-AS1-327 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 1448.00 3.51 5.51 44.39 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 1814.00 4.39 6.90 38.78 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 18693.00 45.26 71.08 100.0 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 1416.00 3.43 5.38 43.84 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 8933.00 21.63 33.97 100.0 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 14959.00 40.47 56.88 96.9 SNHG26-250 lncRNA gastroesophageal sphincter (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 17308.00 46.83 65.81 97.84 SNHG26-250 lncRNA gastroesophageal sphincter (Tissue)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 801.00 9.96 3.05 100.0 LINC02422-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 244.00 27.73 0.93 100.0 ENST00000753088 lncRNA gastroesophageal sphincter (Tissue)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 45.00 5.11 0.17 100.0 ENST00000753088 lncRNA gastroesophageal sphincter (Tissue)