ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 13214.00 98.77 50.24 100.0 TEKT4P2-201 transcribed unprocessed pseudogene gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 10974.00 77.59 41.73 96.98 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 317.00 2.24 1.21 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 32.00 0.23 0.12 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 78.00 0.55 0.30 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 1.00 0.00 0.00 100.0 ENST00000563103 lncRNA gastroesophageal sphincter (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 1225.00 38.84 4.66 100.0 RPL4-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 519.00 16.46 1.97 100.0 RPL4-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 206131.00 82.39 783.77 93.56 ENST00000565336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 13981.00 5.59 53.16 53.8 ENST00000565336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 208.00 0.28 0.79 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 283.00 0.38 1.08 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 336.00 0.45 1.28 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 47258.00 63.25 179.69 67.74 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 82.00 11.99 0.31 100.0 RPL4-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 323.00 47.22 1.23 100.0 RPL4-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 31812.30 30.21 120.96 47.18 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 42729.31 40.58 162.47 68.61 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 133.00 0.13 0.51 100.0 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 2571.00 51.15 9.78 100.0 ENST00000570843 lncRNA gastroesophageal sphincter (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1280.00 79.90 4.87 100.0 MIR497HG-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 14771.00 98.64 56.16 98.84 MIR22HG-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 5214.00 88.43 19.83 95.06 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 148.00 2.51 0.56 49.01 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 154.00 2.61 0.59 50.99 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)