ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 23.00 46.94 0.09 100.0 ENST00000578036 lncRNA gastroesophageal sphincter (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 94.00 72.31 0.36 100.0 RPL23A-207 protein coding gastroesophageal sphincter (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 203.00 91.86 0.77 100.0 MIR744-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 56.00 42.75 0.21 100.0 MIR378C-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 312.00 67.24 1.19 70.91 MIR142HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 18860.00 17.12 71.71 93.29 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 57.70 0.05 0.22 42.11 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 167.10 0.15 0.64 72.97 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 89994.00 81.70 342.18 91.66 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 1199.00 42.34 4.56 100.0 MIR133A1HG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 2385.00 5.06 9.07 41.27 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 51.00 0.11 0.19 100.0 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 23684.00 50.21 90.05 97.37 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 16960.00 35.96 64.49 98.99 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1400.00 2.97 5.32 48.88 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 4.00 30.77 0.02 57.14 ENST00000582320 lncRNA gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 3891.00 48.49 14.79 100.0 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 980.81 12.22 3.73 40.36 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 1713.21 21.35 6.51 53.72 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 191081.00 98.79 726.55 99.95 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 58.00 0.03 0.22 100.0 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 33.00 23.57 0.13 100.0 MIR151B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 22.00 2.02 0.08 100.0 SNORD3A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1001.00 59.09 3.81 100.0 SNORD92-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1550.00 27.04 5.89 100.0 NSRP1-214 protein coding gastroesophageal sphincter (Tissue)