ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 924.00 80.84 3.51 100.0 RPS3A-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 6503.00 96.80 24.73 100.0 COX7C-203 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 506.00 10.53 1.92 100.0 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 1872.00 38.97 7.12 73.7 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 802.00 16.69 3.05 100.0 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 732.73 15.25 2.79 38.54 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 12542.00 62.04 47.69 89.85 RACK1-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 6560.00 32.45 24.94 64.62 RACK1-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 1392.00 5.21 5.29 100.0 RNA5SP486-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 349.00 86.17 1.33 100.0 SCARNA5-201 scaRNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 47432.00 5.21 180.35 50.59 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 363.00 0.04 1.38 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 73850.00 8.11 280.80 59.43 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 151.00 0.02 0.57 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 765.00 0.08 2.91 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 503214.00 55.23 1913.37 90.89 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 142051.00 15.59 540.12 99.17 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 54.00 0.01 0.21 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 2000.00 0.22 7.60 56.27 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 625.00 0.07 2.38 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 68.00 0.01 0.26 20.12 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 1789.00 0.20 6.80 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 994.00 77.96 3.78 81.28 MIR3142HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 2233.00 86.08 8.49 100.0 SNHG6-204 retained intron gastroesophageal sphincter (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 17965.00 81.32 68.31 91.11 MIR151A-201 miRNA gastroesophageal sphincter (Tissue)