ENCFF158HXL

Library Details

Organism: Homo Sapiens
Biosample: right lobe of liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR603XUX
Description: Part of ENCODE experiment ENCSR603XUX. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 3624.00 37.32 31.04 91.65 TMEM107-204 protein coding right lobe of liver (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 50.00 0.51 0.43 100.0 TMEM107-204 protein coding right lobe of liver (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 572.00 55.59 4.90 100.0 SNHG16-201 lncRNA right lobe of liver (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 12984.00 82.41 111.20 94.88 SNORD105B-201 snoRNA right lobe of liver (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 452.00 23.74 3.87 33.07 SNORD121B-201 snoRNA right lobe of liver (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 800.00 74.63 6.85 100.0 SNORD127-201 snoRNA right lobe of liver (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 2996.00 87.37 25.66 100.0 SNORD42B-201 snoRNA right lobe of liver (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 31.00 0.76 0.27 100.0 RNY4P25-201 misc RNA right lobe of liver (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 343.00 82.45 2.94 100.0 SNORD121A-201 snoRNA right lobe of liver (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2168.00 88.85 18.57 100.0 SNORD126-201 snoRNA right lobe of liver (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1436.00 57.42 12.30 100.0 SNHG12-201 retained intron right lobe of liver (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2660.00 95.41 22.78 100.0 SMC1A-204 retained intron right lobe of liver (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 700.00 51.21 6.00 100.0 DDX39B-219 retained intron right lobe of liver (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 106.00 7.75 0.91 100.0 DDX39B-219 retained intron right lobe of liver (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1070.00 83.27 9.16 100.0 RPS8-206 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1500.00 61.73 12.85 100.0 RPL13-207 retained intron right lobe of liver (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 45.00 1.85 0.39 100.0 RPL13-207 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 1.00 0.00 0.01 100.0 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 416788.00 70.24 3569.55 98.55 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2618.00 0.44 22.42 29.31 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 81.00 0.01 0.69 100.0 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 53714.00 9.05 460.03 82.4 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 875.00 0.15 7.49 57.6 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2703.00 0.46 23.15 51.84 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 710.00 0.12 6.08 51.01 EIF4A2-219 retained intron right lobe of liver (Tissue)