ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 921.00 93.31 4.12 100.0 MEG8-225 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 24340.00 92.00 108.92 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 2.00 0.01 0.01 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 9.00 0.03 0.04 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 961.00 3.63 4.30 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 821.00 3.10 3.67 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 145.00 0.95 0.65 100.0 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 7287.00 47.62 32.61 96.15 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 29.00 0.19 0.13 100.0 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 788.00 5.15 3.53 100.0 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1849.00 12.08 8.27 100.0 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 2115.00 13.82 9.46 92.16 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 2046.00 13.96 9.16 33.92 ENST00000655317 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 1065.00 7.27 4.77 100.0 ENST00000655317 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 6982.00 47.66 31.24 74.4 ENST00000655317 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 140.00 0.96 0.63 100.0 ENST00000655317 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 2975.00 1.00 13.31 85.96 LINC01962-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 291632.00 97.94 1305.07 100.0 LINC01962-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 255.00 0.09 1.14 100.0 LINC01962-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 3401.00 56.92 15.22 91.75 SNHG14-241 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 3088.00 96.83 13.82 100.0 MEG8-228 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 2985.00 68.03 13.36 100.0 SNHG14-254 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 530.00 13.77 2.37 100.0 SNHG14-261 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 2066.00 53.69 9.25 88.78 SNHG14-261 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 691.00 9.45 3.09 100.0 LIMD1-AS1-204 lncRNA esophagus muscularis mucosa (Tissue)