ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1059.00 40.94 4.74 64.42 HSPA9-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 2765.00 86.30 12.37 100.0 DNM3OS-205 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 183523.00 43.03 821.27 99.85 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1564.00 0.37 7.00 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 84.00 0.02 0.38 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 103.00 0.02 0.46 74.1 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 567.00 0.13 2.54 89.43 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 8.00 0.00 0.04 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 95.00 0.02 0.43 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 165.00 0.04 0.74 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 236.00 0.06 1.06 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 6628.00 1.55 29.66 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 220.00 0.05 0.98 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 94.00 0.02 0.42 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 885.00 0.21 3.96 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 2.00 0.00 0.01 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 700.00 0.16 3.13 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 711.00 0.17 3.18 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 2708.00 0.63 12.12 80.91 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 2326.00 0.55 10.41 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 2814.00 0.66 12.59 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 1493.00 0.35 6.68 91.99 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 8402.00 1.97 37.60 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 75.00 0.02 0.34 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 822.00 0.19 3.68 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)