ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 6884.00 95.06 30.81 100.0 RGS11-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 2485.00 4.81 11.12 88.18 NOP56-217 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 37749.00 73.03 168.93 78.97 NOP56-217 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 350.00 0.13 1.57 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2254.00 0.84 10.09 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 377.00 0.14 1.69 52.73 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 338.00 0.13 1.51 47.27 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 232464.00 87.06 1040.29 93.85 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 7118.00 2.67 31.85 87.35 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1618.00 0.61 7.24 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 1474.00 78.07 6.60 100.0 GNL3-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 281.00 14.88 1.26 100.0 GNL3-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 808.00 72.53 3.62 100.0 RPL5-205 retained intron esophagus muscularis mucosa (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 63.00 5.66 0.28 100.0 RPL5-205 retained intron esophagus muscularis mucosa (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 16.00 0.48 0.07 100.0 ZBED9-AS1-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1549.00 90.48 6.93 100.0 RPS3A-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 8078.00 96.60 36.15 100.0 COX7C-203 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 3364.85 17.07 15.06 42.2 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 7158.23 36.32 32.03 72.23 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 6991.00 35.47 31.29 99.86 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1227.00 6.23 5.49 100.0 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 29167.00 73.24 130.52 92.76 RACK1-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 9459.00 23.75 42.33 61.78 RACK1-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 18.00 3.18 0.08 100.0 RNA5SP486-201 rRNA pseudogene esophagus muscularis mucosa (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1166.00 87.28 5.22 100.0 SCARNA5-201 scaRNA esophagus muscularis mucosa (Tissue)