ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 16733.00 5.04 74.88 60.74 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 3.00 0.00 0.01 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 161.00 0.05 0.72 28.6 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 17926.00 5.40 80.22 54.77 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 6787.00 98.33 30.37 100.0 RPS8-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 20.00 4.71 0.09 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 143.00 33.65 0.64 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 102.00 24.00 0.46 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 262.00 0.07 1.17 100.0 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 208366.00 54.29 932.45 99.66 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2128.00 0.55 9.52 100.0 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 170354.00 44.39 762.34 94.88 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 19.00 47.50 0.09 100.0 GABRE-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 416.00 0.94 1.86 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 49.00 0.11 0.22 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 80.00 0.18 0.36 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 93.00 0.21 0.42 76.86 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 22494.00 50.87 100.66 99.52 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 7.00 0.02 0.03 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 12382.00 28.00 55.41 69.77 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 951.00 31.33 4.26 66.74 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 111.00 3.66 0.50 100.0 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 380.00 12.52 1.70 100.0 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 50.00 0.59 0.22 100.0 RN7SL2-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 623.00 7.38 2.79 20.9 RN7SL2-201 misc RNA esophagus muscularis mucosa (Tissue)