ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 429.00 11.98 1.92 66.0 SNORD126-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3064.00 85.56 13.71 97.58 SNORD126-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 5005.00 91.40 22.40 97.66 SNORD124-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 37.00 6.76 0.17 100.0 SNHG12-201 retained intron esophagus muscularis mucosa (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 625.00 20.82 2.80 75.94 RPL3-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 712.00 23.72 3.19 100.0 RPL3-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2516.00 96.84 11.26 100.0 SMC1A-204 retained intron esophagus muscularis mucosa (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 72871.00 97.07 326.10 99.37 RABGGTB-208 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 1745.00 51.20 7.81 76.4 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 106.00 3.11 0.47 100.0 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 333.00 9.77 1.49 100.0 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 860.00 81.13 3.85 100.0 RPS8-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1503.00 0.57 6.73 100.0 RPL13-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 256761.00 97.98 1149.02 99.61 RPL13-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 22749.00 6.86 101.80 85.87 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 157.00 0.05 0.70 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 87370.00 26.33 390.98 98.23 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 620.00 0.19 2.77 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 16733.00 5.04 74.88 60.74 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 3.00 0.00 0.01 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 32.00 0.01 0.14 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 124772.00 37.60 558.36 81.59 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 161.00 0.05 0.72 28.6 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1413.00 0.43 6.32 48.01 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 630.00 0.19 2.82 58.28 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)