ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 3889.00 89.61 17.40 95.65 MIR194-2HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 416.00 9.59 1.86 39.85 MIR194-2HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 23.00 0.23 0.10 100.0 LINC01783-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 211.00 13.38 0.94 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 4.00 0.25 0.02 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 455.00 28.85 2.04 85.69 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 82.00 5.20 0.37 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 165.00 10.46 0.74 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 2.00 100.00 0.01 100.0 MRPL32-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 2.00 33.33 0.01 100.0 ENST00000436739 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 1680.00 50.60 7.52 95.24 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 782.00 23.55 3.50 93.32 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 4.00 0.12 0.02 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 27.00 0.81 0.12 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 99.00 2.98 0.44 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 456.00 61.29 2.04 96.41 SNHG16-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 124.00 16.67 0.55 100.0 SNHG16-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 96.00 47.52 0.43 100.0 SNHG14-207 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 22101.00 77.48 98.90 94.86 SNORD105B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 91.00 28.98 0.41 53.53 SNORD121B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 623.00 1.03 2.79 100.0 SNORD127-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 58366.00 96.91 261.19 99.23 SNORD127-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 11172.00 96.04 50.00 100.0 SNORD42B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 292.00 5.06 1.31 100.0 RNY4P25-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 116.00 54.21 0.52 100.0 SNORD121A-201 snoRNA esophagus muscularis mucosa (Tissue)