ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 8.00 0.01 0.01 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 62.00 0.05 0.11 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 82528.83 61.83 150.64 66.98 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 663.00 0.50 1.21 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 295.00 0.22 0.54 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 187.00 0.14 0.34 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 235.00 0.18 0.43 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 13540.00 6.81 24.72 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 1052.00 0.53 1.92 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 31.00 0.02 0.06 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1593.00 0.80 2.91 74.23 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 180675.00 90.90 329.80 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 40989.00 92.57 74.82 98.53 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 1583.00 3.57 2.89 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 10.00 0.02 0.02 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 2.00 0.00 0.00 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 501.00 71.16 0.91 100.0 B4GALT1-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 737.00 3.87 1.35 100.0 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 3185.00 16.74 5.81 82.05 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 1179.00 6.20 2.15 100.0 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 5.00 41.67 0.01 100.0 MIR34BHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 4402.00 81.37 8.04 86.11 THBS3-AS1-228 lncRNA esophagus squamous epithelium (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 3052.00 48.62 5.57 100.0 MIR200CHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 1112.00 17.72 2.03 100.0 MIR200CHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 18150.00 79.18 33.13 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)