ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3875.00 54.16 7.07 91.13 NSRP1-214 protein coding esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 623.00 3.83 1.14 100.0 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2934.00 18.02 5.36 95.66 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 4539.00 27.88 8.29 84.64 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 3613.00 22.19 6.60 94.16 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1622.00 9.96 2.96 70.98 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 2413.00 69.66 4.40 100.0 ODAD3-204 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1478.00 5.53 2.70 100.0 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 172.00 0.64 0.31 100.0 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 15322.00 57.28 27.97 66.38 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 658.00 0.05 1.20 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 869878.22 71.68 1587.84 75.7 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 310194.20 25.56 566.21 25.95 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 9149.00 0.75 16.70 90.23 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 162.00 0.01 0.30 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 25.00 0.00 0.05 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 1067.00 26.70 1.95 100.0 RPS11-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 2472.00 61.86 4.51 100.0 RPS11-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 2631443.00 77.67 4803.31 78.88 CARMN-209 lncRNA esophagus squamous epithelium (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1541.00 67.15 2.81 100.0 ENST00000602478 lncRNA esophagus squamous epithelium (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 615.00 45.96 1.12 100.0 PPFIA1P1-201 processed pseudogene esophagus squamous epithelium (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 758.00 38.50 1.38 100.0 SNORD114-21-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 900.00 45.71 1.64 100.0 SNORD114-21-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 253.00 61.11 0.46 100.0 SNORD115-40-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2837.00 96.96 5.18 100.0 MIR98-201 miRNA esophagus squamous epithelium (Tissue)