ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 133.00 1.54 0.24 100.0 WDR74-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 136.00 1.57 0.25 100.0 WDR74-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 96.00 1.11 0.18 73.28 WDR74-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 51.00 0.59 0.09 55.43 WDR74-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 145.00 1.68 0.26 100.0 WDR74-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 13544.00 83.52 24.72 100.0 HSPA8-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 199.00 15.58 0.36 100.0 SCARNA9-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 81017.00 96.30 147.88 100.0 TAF1D-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 805.00 0.96 1.47 100.0 TAF1D-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 24474.00 96.39 44.67 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 1.00 0.00 0.00 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 50.00 0.20 0.09 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 460.00 28.38 0.84 100.0 RPS2-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 223678.00 79.95 408.29 81.18 ENST00000548801 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 107.00 1.90 0.20 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1395.00 24.76 2.55 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1093.00 19.40 2.00 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 9111.00 47.76 16.63 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 8876.00 46.53 16.20 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 220.00 1.15 0.40 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 128.00 0.67 0.23 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1305.00 99.62 2.38 100.0 TEKT4P2-201 transcribed unprocessed pseudogene esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 1.00 0.00 0.00 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 806.00 0.78 1.47 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 97315.00 93.72 177.63 97.65 RPL4-202 retained intron esophagus squamous epithelium (Tissue)