ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 320.00 3.16 0.58 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 5570.00 55.07 10.17 71.24 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 455.00 2.49 0.83 10.23 RN7SL2-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1182.00 6.46 2.16 100.0 RN7SL2-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 948.00 88.27 1.73 100.0 RGS11-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 6470.00 3.90 11.81 82.26 NOP56-217 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 109165.00 65.86 199.26 71.01 NOP56-217 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 150.00 0.11 0.27 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 107464.00 75.75 196.16 95.16 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 18159.00 12.80 33.15 90.8 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 318.00 0.22 0.58 59.44 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 217.00 0.15 0.40 40.56 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1416.00 1.00 2.58 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2861.00 2.02 5.22 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 791.00 7.66 1.44 100.0 GNL3-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 9044.00 87.63 16.51 100.0 GNL3-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 7200.00 84.95 13.14 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 4.00 0.05 0.01 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 311.00 3.67 0.57 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 68.00 4.00 0.12 100.0 ZBED9-AS1-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 13537.00 94.30 24.71 100.0 RPS3A-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 29180.00 99.02 53.26 100.0 COX7C-203 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 17427.08 50.53 31.81 67.14 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 4878.00 14.14 8.90 99.25 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1476.00 4.28 2.69 100.0 RACK1-229 protein coding esophagus squamous epithelium (Tissue)