ENCFF076JME

Library Details

Organism: Homo Sapiens
Biosample: ovary (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR024CRN
Description: Part of ENCODE experiment ENCSR024CRN. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's female gonad tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 197.00 75.48 0.87 80.74 MIR142HG-201 lncRNA ovary (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 2.00 0.77 0.01 2.6 MIR142HG-201 lncRNA ovary (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 5.00 0.16 0.02 100.0 SNORD3C-201 snoRNA ovary (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 68.19 0.01 0.30 39.41 RPL23A-208 retained intron ovary (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 198.70 0.02 0.87 71.99 RPL23A-208 retained intron ovary (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 951490.00 89.20 4189.12 93.01 RPL23A-208 retained intron ovary (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 109667.00 10.28 482.83 90.91 RPL23A-208 retained intron ovary (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 7192.00 9.45 31.66 77.4 RPL17-211 retained intron ovary (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 12543.00 16.48 55.22 61.71 RPL17-211 retained intron ovary (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 211.00 0.28 0.93 100.0 RPL17-211 retained intron ovary (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 42472.00 55.82 186.99 94.51 RPL17-211 retained intron ovary (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 9984.00 13.12 43.96 92.0 RPL17-211 retained intron ovary (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 21.00 10.50 0.09 15.11 ENST00000582320 lncRNA ovary (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 21.00 10.50 0.09 100.0 ENST00000582320 lncRNA ovary (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 6.00 3.00 0.03 100.0 ENST00000582320 lncRNA ovary (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 8335.00 20.11 36.70 100.0 RPL17-214 retained intron ovary (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 18973.21 45.77 83.53 62.54 RPL17-214 retained intron ovary (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 11378.25 27.45 50.09 36.27 RPL17-214 retained intron ovary (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 57.00 0.02 0.25 100.0 SNORD43-201 snoRNA ovary (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 1.00 0.00 0.00 100.0 SNORD43-201 snoRNA ovary (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 317916.00 98.32 1399.69 99.94 SNORD43-201 snoRNA ovary (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 120.00 34.88 0.53 100.0 MIR151B-201 miRNA ovary (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 142.00 3.98 0.63 100.0 SNORD3A-201 snoRNA ovary (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1619.00 59.61 7.13 100.0 SNORD92-201 snoRNA ovary (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1384.00 15.92 6.09 100.0 NSRP1-214 protein coding ovary (Tissue)