ENCFF076JME

Library Details

Organism: Homo Sapiens
Biosample: ovary (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR024CRN
Description: Part of ENCODE experiment ENCSR024CRN. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's female gonad tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5749.00 66.15 25.31 84.99 NSRP1-214 protein coding ovary (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 692.00 22.03 3.05 100.0 MIR23AHG-201 lncRNA ovary (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 538.00 17.13 2.37 96.76 MIR23AHG-201 lncRNA ovary (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 412.00 13.12 1.81 69.13 MIR23AHG-201 lncRNA ovary (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 733.00 23.34 3.23 93.97 MIR23AHG-201 lncRNA ovary (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 280.00 8.91 1.23 75.07 MIR23AHG-201 lncRNA ovary (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 6.00 18.75 0.03 100.0 ODAD3-204 nonsense mediated decay ovary (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 229.00 1.61 1.01 100.0 VMP1-217 retained intron ovary (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 108.00 0.76 0.48 100.0 VMP1-217 retained intron ovary (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 7673.00 54.05 33.78 62.55 VMP1-217 retained intron ovary (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 897.00 0.09 3.95 100.0 C19orf48P-203 retained intron ovary (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 681411.00 67.94 3000.04 74.31 C19orf48P-203 retained intron ovary (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 269428.72 26.86 1186.21 27.66 C19orf48P-203 retained intron ovary (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 16291.00 1.62 71.72 91.25 C19orf48P-203 retained intron ovary (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 49.00 0.00 0.22 100.0 C19orf48P-203 retained intron ovary (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 5.00 0.00 0.02 100.0 C19orf48P-203 retained intron ovary (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 175.00 16.68 0.77 100.0 RPS11-206 retained intron ovary (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 678.00 64.63 2.99 100.0 RPS11-206 retained intron ovary (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 716841.00 80.70 3156.03 82.09 CARMN-209 lncRNA ovary (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 724.00 52.54 3.19 100.0 ENST00000602478 lncRNA ovary (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 185.00 68.77 0.81 100.0 PPFIA1P1-201 processed pseudogene ovary (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 2039.00 21.93 8.98 100.0 SNORD114-21-201 snoRNA ovary (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 5817.00 62.56 25.61 100.0 SNORD114-21-201 snoRNA ovary (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 94.00 42.34 0.41 100.0 SNORD115-40-201 snoRNA ovary (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 3513.00 97.26 15.47 100.0 MIR98-201 miRNA ovary (Tissue)