ENCFF076JME

Library Details

Organism: Homo Sapiens
Biosample: ovary (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR024CRN
Description: Part of ENCODE experiment ENCSR024CRN. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's female gonad tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 53.00 2.41 0.23 100.0 RNY4P25-201 misc RNA ovary (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 183.00 73.79 0.81 100.0 SNORD121A-201 snoRNA ovary (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3091.00 82.16 13.61 96.71 SNORD126-201 snoRNA ovary (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 462.00 12.28 2.03 73.92 SNORD126-201 snoRNA ovary (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 10329.00 85.17 45.48 90.57 SNORD124-201 snoRNA ovary (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 694.00 38.75 3.06 100.0 SNHG12-201 retained intron ovary (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1471.00 20.70 6.48 100.0 RPL3-212 retained intron ovary (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 533.00 7.50 2.35 51.55 RPL3-212 retained intron ovary (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 5786.00 96.39 25.47 100.0 SMC1A-204 retained intron ovary (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 69147.00 94.67 304.43 99.46 RABGGTB-208 protein coding CDS not defined ovary (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 755.00 13.72 3.32 100.0 DDX39B-219 retained intron ovary (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 2564.00 46.58 11.29 76.29 DDX39B-219 retained intron ovary (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 272.00 4.94 1.20 100.0 DDX39B-219 retained intron ovary (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1113.00 72.79 4.90 100.0 RPS8-206 protein coding CDS not defined ovary (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 106776.00 92.49 470.10 99.48 RPL13-207 retained intron ovary (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 4498.00 3.90 19.80 100.0 RPL13-207 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 153118.00 61.08 674.13 98.15 EIF4A2-219 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 1192.00 0.48 5.25 100.0 EIF4A2-219 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2082.00 0.83 9.17 40.04 EIF4A2-219 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 9.00 0.00 0.04 100.0 EIF4A2-219 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 29.00 0.01 0.13 100.0 EIF4A2-219 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 20886.00 8.33 91.95 53.19 EIF4A2-219 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 373.00 0.15 1.64 43.63 EIF4A2-219 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2762.00 1.10 12.16 51.33 EIF4A2-219 retained intron ovary (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 576.00 0.23 2.54 55.6 EIF4A2-219 retained intron ovary (Tissue)