ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 375.29 7.18 1.80 14.96 RNY1-201 misc RNA transverse colon (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 277.00 5.30 1.33 100.0 RNY1-201 misc RNA transverse colon (Tissue)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 47.00 0.90 0.23 100.0 RNY1-201 misc RNA transverse colon (Tissue)
ENST00000364273.1 ENST00000364273.1_2_82_+ 2–82 57.00 31.67 0.27 100.0 SNORD115-42-201 snoRNA transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 3495.00 4.46 16.76 100.0 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 466.00 0.59 2.23 100.0 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 3161.86 4.03 15.16 36.27 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 310.00 0.40 1.49 100.0 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 493.00 0.63 2.36 100.0 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 699.82 0.89 3.36 64.38 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 1170.00 1.49 5.61 100.0 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 805.00 1.03 3.86 100.0 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 653.06 0.83 3.13 54.97 RNA5SP202-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1275.00 29.41 6.11 100.0 SNORD114-9-201 snoRNA transverse colon (Tissue)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 2563.00 59.12 12.29 100.0 SNORD114-9-201 snoRNA transverse colon (Tissue)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 536.00 5.07 2.57 100.0 Y_RNA.234-201 misc RNA transverse colon (Tissue)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 3204.00 4.54 15.36 100.0 RNA5S9-201 rRNA transverse colon (Tissue)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 12.00 50.00 0.06 100.0 SNORD115-23-201 snoRNA transverse colon (Tissue)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 172.00 4.89 0.82 100.0 RNA5SP141-201 rRNA pseudogene transverse colon (Tissue)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 249.00 72.81 1.19 100.0 SNORD114-15-201 snoRNA transverse colon (Tissue)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 135.00 28.78 0.65 100.0 ENST00000364722 snoRNA transverse colon (Tissue)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 85.00 36.17 0.41 100.0 SNORD115-15-201 snoRNA transverse colon (Tissue)
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 512.00 61.10 2.45 100.0 SNORD113-3-201 snoRNA transverse colon (Tissue)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 14621.00 89.10 70.10 100.0 SNORD52-201 snoRNA transverse colon (Tissue)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 676.00 17.54 3.24 28.5 SNORD117-201 snoRNA transverse colon (Tissue)