ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 369.00 63.08 1.77 87.44 SNORD115-9-201 snoRNA transverse colon (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 45732.00 75.81 219.25 86.78 RNA5SP358-201 rRNA pseudogene transverse colon (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 49.00 0.83 0.23 58.33 RNA5SP145-201 rRNA pseudogene transverse colon (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 6.00 33.33 0.03 100.0 Y_RNA.105-201 misc RNA transverse colon (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 20.00 14.49 0.10 100.0 RNY4P9-201 misc RNA transverse colon (Tissue)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 57.00 1.30 0.27 100.0 RNU5B-1-201 snRNA transverse colon (Tissue)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 4.00 0.09 0.02 100.0 RNU5B-1-201 snRNA transverse colon (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 1190.00 27.07 5.71 100.0 RNU5B-1-201 snRNA transverse colon (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 388.00 8.83 1.86 100.0 RNU5B-1-201 snRNA transverse colon (Tissue)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 2941.00 88.72 14.10 96.55 SNORD115-18-201 snoRNA transverse colon (Tissue)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 1.00 0.10 0.00 50.0 RNY4P27-201 misc RNA transverse colon (Tissue)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 128.00 12.20 0.61 99.22 RNY4P27-201 misc RNA transverse colon (Tissue)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 256.00 16.06 1.23 100.0 Y_RNA.136-201 misc RNA transverse colon (Tissue)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 125.00 55.07 0.60 100.0 SNORD115-41-201 snoRNA transverse colon (Tissue)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 2.00 1.56 0.01 100.0 SNORD115-5-201 snoRNA transverse colon (Tissue)
ENST00000363723.1 ENST00000363723.1_2_82_+ 2–82 6.00 37.50 0.03 100.0 SNORD115-33-201 snoRNA transverse colon (Tissue)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 5460.00 92.51 26.18 97.41 SNORD114-25-201 snoRNA transverse colon (Tissue)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 5369.00 96.86 25.74 100.0 SNORD113-7-201 snoRNA transverse colon (Tissue)
ENST00000363856.1 ENST00000363856.1_2_82_+ 2–82 2.00 4.08 0.01 100.0 SNORD115-8-201 snoRNA transverse colon (Tissue)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 64.00 26.45 0.31 100.0 Y_RNA.181-201 misc RNA transverse colon (Tissue)
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 40.00 31.50 0.19 100.0 SNORD115-16-201 snoRNA transverse colon (Tissue)
ENST00000364079.1 ENST00000364079.1_2_82_+ 2–82 17.00 20.24 0.08 100.0 SNORD115-32-201 snoRNA transverse colon (Tissue)
ENST00000364117.1 ENST00000364117.1_2_82_+ 2–82 22.00 57.89 0.11 100.0 SNORD115-30-201 snoRNA transverse colon (Tissue)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 375.29 7.18 1.80 14.96 RNY1-201 misc RNA transverse colon (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 277.00 5.30 1.33 100.0 RNY1-201 misc RNA transverse colon (Tissue)