ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 498.00 0.02 2.39 24.13 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 3382.00 28.53 16.21 41.04 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 4858.00 40.99 23.29 71.62 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 40.00 0.99 0.19 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 8313.00 0.75 39.85 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 891433.00 80.05 4273.79 92.62 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 1291.00 55.36 6.19 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 6.00 0.35 0.03 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 19.00 0.11 0.09 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 121.00 0.32 0.58 11.4 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 859.00 2.26 4.12 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 346.00 0.91 1.66 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 29.00 0.08 0.14 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 2205.00 5.79 10.57 99.37 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 754.00 1.98 3.61 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 551.00 2.98 2.64 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 5260.00 28.46 25.22 37.93 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 386.00 2.12 1.85 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 138.00 0.28 0.66 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 87.00 0.18 0.42 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 354.00 0.72 1.70 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 43381.00 88.38 207.98 97.63 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 398.00 0.81 1.91 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 342.00 1.92 1.64 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 18283.00 54.59 87.65 70.59 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA transverse colon (Tissue)