ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1645.00 46.03 7.89 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 986.00 27.59 4.73 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 31.00 4.78 0.15 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 23.00 0.53 0.11 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 1633.00 53.44 7.83 73.46 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 612.00 0.08 2.93 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 3.00 20.00 0.01 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 1562.00 8.82 7.49 90.87 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 3.00 0.02 0.01 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 4283.00 24.17 20.53 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 3288.00 43.69 15.76 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 313.00 0.03 1.50 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 216.00 0.02 1.04 90.38 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 123.00 0.01 0.59 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 64.00 0.01 0.31 82.05 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 94181.00 8.45 451.53 33.42 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 34.00 0.00 0.16 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 6.00 0.00 0.03 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 2410.00 87.13 11.55 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 63.00 0.00 0.30 98.44 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 1586.00 33.42 7.60 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 1189.00 25.05 5.70 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 513.00 11.06 2.46 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 10.00 0.06 0.05 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 42.00 0.00 0.20 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA transverse colon (Tissue)