ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 298.63 0.01 1.43 49.86 SNHG25-206 lncRNA transverse colon (Tissue)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 368.16 0.02 1.77 39.12 SNHG25-206 lncRNA transverse colon (Tissue)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 7351.00 0.34 35.24 84.93 SNHG25-206 lncRNA transverse colon (Tissue)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 249.00 0.01 1.19 100.0 SNHG25-206 lncRNA transverse colon (Tissue)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 1.00 1.89 0.00 100.0 ENST00000778783 lncRNA transverse colon (Tissue)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 2589.00 85.30 12.41 88.09 MIR155HG-205 lncRNA transverse colon (Tissue)
ENST00000784740.1 ENST00000784740.1_245_265_+ 245–265 1.00 50.00 0.00 100.0 ENST00000784740 lncRNA transverse colon (Tissue)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 47.00 0.88 0.23 100.0 ENST00000785178 lncRNA transverse colon (Tissue)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 120.00 4.13 0.58 48.0 ENST00000786284 lncRNA transverse colon (Tissue)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 1055.00 36.30 5.06 100.0 ENST00000786284 lncRNA transverse colon (Tissue)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 130.00 4.47 0.62 72.22 ENST00000786284 lncRNA transverse colon (Tissue)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 1320.00 37.29 6.33 90.66 ENST00000788343 lncRNA transverse colon (Tissue)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 6454.62 23.18 30.95 53.86 ENST00000797550 lncRNA transverse colon (Tissue)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 4907.93 17.63 23.53 40.95 ENST00000797550 lncRNA transverse colon (Tissue)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 9747.00 35.01 46.73 77.42 ENST00000797550 lncRNA transverse colon (Tissue)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 58178.00 86.52 278.92 94.81 MIR181A1HG-212 lncRNA transverse colon (Tissue)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 91.00 0.14 0.44 100.0 MIR181A1HG-212 lncRNA transverse colon (Tissue)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 204.00 13.40 0.98 100.0 C19orf48P-218 lncRNA transverse colon (Tissue)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 889.00 58.41 4.26 100.0 C19orf48P-218 lncRNA transverse colon (Tissue)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 11069.00 77.14 53.07 95.5 SNHG18-220 lncRNA transverse colon (Tissue)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 168.00 8.13 0.81 100.0 ENST00000817026 lncRNA transverse colon (Tissue)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 515.20 3.10 2.47 35.02 ENST00000823279 lncRNA transverse colon (Tissue)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 19.00 0.11 0.09 100.0 ENST00000823279 lncRNA transverse colon (Tissue)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 201.21 1.21 0.96 45.94 ENST00000823279 lncRNA transverse colon (Tissue)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 91.00 0.55 0.44 100.0 ENST00000823279 lncRNA transverse colon (Tissue)