ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 2960.00 36.42 14.19 100.0 ENST00000760093 lncRNA transverse colon (Tissue)
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 940.00 11.56 4.51 100.0 ENST00000760093 lncRNA transverse colon (Tissue)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 8923.00 86.35 42.78 93.62 SNHG14-356 lncRNA transverse colon (Tissue)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 30374.00 14.00 145.62 71.62 LINC02806-241 lncRNA transverse colon (Tissue)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 36.00 0.02 0.17 100.0 LINC02806-241 lncRNA transverse colon (Tissue)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 150007.00 69.14 719.18 80.17 LINC02806-241 lncRNA transverse colon (Tissue)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 2065.00 96.90 9.90 100.0 EHBP1-AS1-210 lncRNA transverse colon (Tissue)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 962.00 6.12 4.61 100.0 ENST00000770398 lncRNA transverse colon (Tissue)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 674.00 4.29 3.23 100.0 ENST00000770398 lncRNA transverse colon (Tissue)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 10140.00 64.53 48.61 100.0 ENST00000770398 lncRNA transverse colon (Tissue)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 845.00 2.82 4.05 100.0 ENST00000771298 lncRNA transverse colon (Tissue)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 4146.00 13.86 19.88 100.0 ENST00000771298 lncRNA transverse colon (Tissue)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 18355.00 61.36 88.00 88.48 ENST00000771298 lncRNA transverse colon (Tissue)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 327.00 1.09 1.57 100.0 ENST00000771298 lncRNA transverse colon (Tissue)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 2469.00 78.43 11.84 100.0 ENST00000772672 lncRNA transverse colon (Tissue)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 2.00 0.06 0.01 100.0 ENST00000772672 lncRNA transverse colon (Tissue)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 26.00 0.83 0.12 100.0 ENST00000772672 lncRNA transverse colon (Tissue)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 368.00 19.43 1.76 100.0 ENST00000773843 lncRNA transverse colon (Tissue)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 101.00 0.02 0.48 100.0 SNHG12-223 lncRNA transverse colon (Tissue)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 270564.00 47.10 1297.16 92.01 SNHG12-223 lncRNA transverse colon (Tissue)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 302027.00 52.58 1448.00 98.69 SNHG12-223 lncRNA transverse colon (Tissue)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 18716.00 0.87 89.73 100.0 SNHG25-206 lncRNA transverse colon (Tissue)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 1932385.00 90.01 9264.41 91.57 SNHG25-206 lncRNA transverse colon (Tissue)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 601.00 0.03 2.88 100.0 SNHG25-206 lncRNA transverse colon (Tissue)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 249.08 0.01 1.19 44.56 SNHG25-206 lncRNA transverse colon (Tissue)