ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 23.00 0.01 0.11 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 403.00 0.13 1.93 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1015.00 0.32 4.87 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 11493.00 3.57 55.10 85.93 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 5492.00 1.71 26.33 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 8665.00 2.69 41.54 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 2311.00 0.72 11.08 92.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 19388.00 6.02 92.95 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 190.00 0.06 0.91 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 5426.00 1.69 26.01 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 70683.00 21.97 338.87 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 162.00 0.05 0.78 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 21.00 8.11 0.10 100.0 FTX-219 lncRNA transverse colon (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 158.00 61.00 0.76 90.29 FTX-219 lncRNA transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 283.00 1.05 1.36 47.48 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 434.00 1.61 2.08 71.62 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 11283.00 41.97 54.09 78.21 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 313.00 1.16 1.50 52.52 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 6982.00 25.97 33.47 69.88 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 1062.00 3.95 5.09 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 1823.00 6.78 8.74 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 274.00 1.02 1.31 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 818.00 1.60 3.92 79.26 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 9763.00 19.07 46.81 95.26 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 39.00 0.08 0.19 100.0 ENST00000651540 lncRNA transverse colon (Tissue)