ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 4093.00 36.63 19.62 98.53 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 1959.00 17.53 9.39 94.55 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 1330.00 11.90 6.38 100.0 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 563.00 5.04 2.70 92.75 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 68.00 0.61 0.33 100.0 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 382.00 3.42 1.83 38.62 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 622.00 5.57 2.98 69.42 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 568.00 5.08 2.72 71.0 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 2715.23 5.92 13.02 53.6 5S_rRNA.20-201 rRNA pseudogene transverse colon (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1372.00 11.05 6.58 100.0 HSPA9-211 retained intron transverse colon (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 6303.00 50.76 30.22 73.46 HSPA9-211 retained intron transverse colon (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 3164.00 61.69 15.17 100.0 DNM3OS-205 lncRNA transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 802.00 0.25 3.85 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1585.00 0.49 7.60 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1692.00 0.53 8.11 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 222.00 0.07 1.06 70.7 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 13951.00 4.34 66.89 96.88 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 36.00 0.01 0.17 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 1935.00 0.60 9.28 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 71.00 0.02 0.34 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 153406.00 47.67 735.47 99.85 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 635.00 0.20 3.04 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 4837.00 1.50 23.19 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 857.00 0.27 4.11 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 2048.00 0.64 9.82 100.0 GAS5-230 retained intron transverse colon (Tissue)