ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 5934.00 0.87 28.45 85.31 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 117616.00 17.21 563.89 81.97 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 772.00 0.11 3.70 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 511454.00 74.85 2452.06 98.88 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2175.00 0.32 10.43 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1437.00 0.21 6.89 35.47 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 652.00 0.10 3.13 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 30236.00 98.27 144.96 100.0 RPS8-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 527.00 27.38 2.53 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 556.00 28.88 2.67 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 97.00 5.04 0.47 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 8682.00 0.81 41.62 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1390.00 0.13 6.66 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 20.00 0.00 0.10 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 385184.00 36.05 1846.68 99.63 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 664937.00 62.24 3187.90 96.46 RPL21-209 retained intron transverse colon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 47.00 29.38 0.23 100.0 GABRE-209 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 18591.00 14.81 89.13 86.66 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 194.00 0.15 0.93 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 96403.00 76.81 462.18 99.55 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 214.00 0.17 1.03 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 262.00 0.21 1.26 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 173.00 0.14 0.83 58.25 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 777.00 0.62 3.73 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 402.00 2.83 1.93 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)