ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 72873.00 96.16 349.37 99.29 SNORD127-201 snoRNA transverse colon (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 23811.00 94.16 114.16 100.0 SNORD42B-201 snoRNA transverse colon (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 96.00 1.15 0.46 100.0 RNY4P25-201 misc RNA transverse colon (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 734.00 73.84 3.52 100.0 SNORD121A-201 snoRNA transverse colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 4385.00 79.57 21.02 93.74 SNORD126-201 snoRNA transverse colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 923.00 16.75 4.43 58.12 SNORD126-201 snoRNA transverse colon (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 26979.00 95.41 129.35 97.88 SNORD124-201 snoRNA transverse colon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 294.00 14.72 1.41 100.0 SNHG12-201 retained intron transverse colon (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 2101.00 30.81 10.07 100.0 RPL3-212 retained intron transverse colon (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1826.00 26.78 8.75 70.83 RPL3-212 retained intron transverse colon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3460.00 96.92 16.59 100.0 SMC1A-204 retained intron transverse colon (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 105415.00 93.43 505.39 98.59 RABGGTB-208 protein coding CDS not defined transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1646.00 29.69 7.89 100.0 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 664.00 11.98 3.18 100.0 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 1484.00 26.77 7.11 81.49 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 4370.00 84.20 20.95 100.0 RPS8-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 128227.00 96.40 614.76 99.83 RPL13-207 retained intron transverse colon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2783.00 2.09 13.34 100.0 RPL13-207 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2175.00 0.32 10.43 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1437.00 0.21 6.89 35.47 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 652.00 0.10 3.13 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 11636.00 1.70 55.79 65.42 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 846.00 0.12 4.06 44.76 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2679.00 0.39 12.84 45.75 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 440.00 0.06 2.11 32.33 EIF4A2-219 retained intron transverse colon (Tissue)