ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 1236.00 0.61 5.93 100.0 SNORD71-201 snoRNA transverse colon (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 229.00 0.11 1.10 100.0 SNORD71-201 snoRNA transverse colon (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 198163.00 98.11 950.05 99.82 SNORD71-201 snoRNA transverse colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 321754.00 74.27 1542.58 87.89 MIR194-2HG-201 lncRNA transverse colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 102201.00 23.59 489.98 57.77 MIR194-2HG-201 lncRNA transverse colon (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 43.00 0.74 0.21 100.0 LINC01783-201 lncRNA transverse colon (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 18.00 78.26 0.09 100.0 RPS7P15-201 processed pseudogene transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 799.00 14.09 3.83 100.0 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 29.00 0.51 0.14 100.0 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 2127.00 37.50 10.20 91.33 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 453.00 7.99 2.17 100.0 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 314.00 5.54 1.51 100.0 SNORD62B-201 snoRNA transverse colon (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 25.00 69.44 0.12 100.0 MRPL32-203 nonsense mediated decay transverse colon (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 7.00 63.64 0.03 100.0 ENST00000436739 lncRNA transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 6291.00 7.40 30.16 84.82 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 44.00 0.05 0.21 100.0 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1437.00 1.69 6.89 100.0 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 358.00 0.42 1.72 100.0 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 49541.00 58.31 237.51 77.46 TMEM107-204 protein coding transverse colon (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1829.00 68.48 8.77 93.99 SNHG16-201 lncRNA transverse colon (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 258.00 9.66 1.24 100.0 SNHG16-201 lncRNA transverse colon (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 28.00 21.21 0.13 100.0 SNHG14-207 lncRNA transverse colon (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 64912.00 88.57 311.21 96.26 SNORD105B-201 snoRNA transverse colon (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 1028.00 47.55 4.93 65.27 SNORD121B-201 snoRNA transverse colon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 72873.00 96.16 349.37 99.29 SNORD127-201 snoRNA transverse colon (Tissue)