ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 195.00 3.10 8.35 43.24 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 149.00 2.37 6.38 100.0 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 582.00 9.25 24.92 100.0 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 528.11 8.39 22.61 64.01 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 3.78 0.06 0.16 4.24 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 1205.00 92.69 51.59 100.0 SNORD114-14-201 snoRNA GM23248 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 12.00 3.79 0.51 100.0 SNORD104-201 snoRNA GM23248 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 2.00 0.63 0.09 100.0 SNORD104-201 snoRNA GM23248 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 39.00 6.30 1.67 84.78 RNA5SP358-201 rRNA pseudogene GM23248 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 1237.00 47.05 52.96 89.06 RNA5SP145-201 rRNA pseudogene GM23248 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 8.00 44.44 0.34 100.0 Y_RNA.105-201 misc RNA GM23248 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 5.00 14.29 0.21 100.0 RNY4P9-201 misc RNA GM23248 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 215.00 11.91 9.20 50.12 RNU5B-1-201 snRNA GM23248 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 26.00 1.44 1.11 100.0 RNU5B-1-201 snRNA GM23248 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 12.00 0.66 0.51 100.0 RNU5B-1-201 snRNA GM23248 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 44.00 2.44 1.88 100.0 RNU5B-1-201 snRNA GM23248 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 332.00 18.39 14.21 100.0 RNU5B-1-201 snRNA GM23248 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 97.00 5.37 4.15 100.0 RNU5B-1-201 snRNA GM23248 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 167.00 11.49 7.15 79.9 RNY4P27-201 misc RNA GM23248 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 639.00 43.95 27.36 93.83 RNY4P27-201 misc RNA GM23248 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 22.00 1.80 0.94 100.0 Y_RNA.136-201 misc RNA GM23248 (Cell line)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 1688.00 92.95 72.27 97.57 SNORD114-25-201 snoRNA GM23248 (Cell line)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 4035.00 94.03 172.75 100.0 SNORD113-7-201 snoRNA GM23248 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 8.00 16.67 0.34 100.0 Y_RNA.181-201 misc RNA GM23248 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 4.00 3.17 0.17 100.0 RNY1-201 misc RNA GM23248 (Cell line)