ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 4.34 3.44 0.19 18.08 RNY1-201 misc RNA GM23248 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 4.00 3.17 0.17 100.0 RNY1-201 misc RNA GM23248 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 11.00 8.73 0.47 100.0 RNY1-201 misc RNA GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 3.00 0.36 0.13 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 21.29 2.53 0.91 4.22 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 7.00 0.83 0.30 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 1.00 0.12 0.04 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 3.20 0.38 0.14 26.66 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 4.00 0.47 0.17 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 6.87 0.82 0.29 57.29 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 1.00 0.12 0.04 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 787.00 48.02 33.69 100.0 SNORD114-9-201 snoRNA GM23248 (Cell line)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 634.00 38.68 27.14 100.0 SNORD114-9-201 snoRNA GM23248 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 2.00 0.53 0.09 100.0 Y_RNA.234-201 misc RNA GM23248 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 10.00 0.41 0.43 100.0 RNA5SP141-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 220.00 71.66 9.42 100.0 SNORD114-15-201 snoRNA GM23248 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 29.00 65.91 1.24 100.0 ENST00000364722 snoRNA GM23248 (Cell line)
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 98.00 41.88 4.20 100.0 SNORD113-3-201 snoRNA GM23248 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 223.00 57.47 9.55 100.0 SNORD52-201 snoRNA GM23248 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 48.00 26.52 2.06 58.54 SNORD117-201 snoRNA GM23248 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 34.00 18.78 1.46 66.67 SNORD117-201 snoRNA GM23248 (Cell line)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 199.00 16.91 8.52 100.0 SNORD114-3-201 snoRNA GM23248 (Cell line)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 81.00 6.88 3.47 100.0 SNORD114-3-201 snoRNA GM23248 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 780.00 66.27 33.39 96.42 SNORD114-3-201 snoRNA GM23248 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 152.00 38.78 6.51 100.0 RNA5SP298-201 rRNA pseudogene GM23248 (Cell line)