ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 4.00 0.12 0.17 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 10.00 0.30 0.43 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 3.00 0.09 0.13 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 2.00 0.06 0.09 40.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 0.87 0.03 0.04 43.53 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 8.00 0.24 0.34 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 3.00 0.09 0.13 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 1.00 0.03 0.04 100.0 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 39.00 1.18 1.67 90.7 RNA5S12-201 rRNA GM23248 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 10.00 33.33 0.43 100.0 Y_RNA.14-201 misc RNA GM23248 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 20.00 6.27 0.86 100.0 RNU5E-1-201 snRNA GM23248 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 31.00 32.63 1.33 100.0 SNORA31-201 snoRNA GM23248 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 2.00 0.08 0.09 100.0 RNA5SP389-201 rRNA pseudogene GM23248 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 16.00 0.61 0.69 72.73 RNA5SP389-201 rRNA pseudogene GM23248 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 21.00 0.80 0.90 84.0 RNA5SP389-201 rRNA pseudogene GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 39.00 0.62 1.67 37.5 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 243.00 3.86 10.40 36.93 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 4.13 0.07 0.18 68.89 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 195.00 3.10 8.35 43.24 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 149.00 2.37 6.38 100.0 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 528.11 8.39 22.61 64.01 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 3.78 0.06 0.16 4.24 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 150.00 2.38 6.42 83.8 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 15.00 0.24 0.64 100.0 RNU5A-1-201 snRNA GM23248 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 586.00 9.31 25.09 81.5 RNU5A-1-201 snRNA GM23248 (Cell line)