ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 25.00 1.52 1.07 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 8457.00 96.28 362.07 100.0 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 125.00 1.42 5.35 100.0 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 37.00 0.42 1.58 100.0 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 4.00 0.05 0.17 100.0 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 44.00 0.50 1.88 62.86 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 834.00 82.17 35.71 99.29 SNHG32-227 lncRNA GM23248 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 84.00 8.28 3.60 100.0 SNHG32-227 lncRNA GM23248 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 13.00 1.28 0.56 100.0 SNHG32-227 lncRNA GM23248 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 5.00 0.49 0.21 100.0 SNHG32-227 lncRNA GM23248 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 193.00 64.12 8.26 100.0 B4GALT1-203 nonsense mediated decay GM23248 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 34.00 5.53 1.46 100.0 ENST00000722183 lncRNA GM23248 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 78.00 12.68 3.34 68.42 ENST00000722183 lncRNA GM23248 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 76.00 12.36 3.25 100.0 ENST00000722183 lncRNA GM23248 (Cell line)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 110.00 94.83 4.71 100.0 MIR34BHG-202 lncRNA GM23248 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 233.00 78.98 9.98 88.59 THBS3-AS1-228 lncRNA GM23248 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 10.00 5.43 0.43 100.0 SNHG16-266 lncRNA GM23248 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 58.00 31.52 2.48 100.0 SNHG16-266 lncRNA GM23248 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 5.00 2.72 0.21 100.0 SNHG16-266 lncRNA GM23248 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 7.00 3.80 0.30 100.0 SNHG16-266 lncRNA GM23248 (Cell line)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 39.00 69.64 1.67 100.0 MEG8-261 lncRNA GM23248 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 12.00 13.04 0.51 100.0 NR2F2-AS1-327 lncRNA GM23248 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 233.00 13.24 9.98 53.44 ENST00000747675 lncRNA GM23248 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 568.00 32.27 24.32 100.0 ENST00000747675 lncRNA GM23248 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 79.00 4.49 3.38 25.32 ENST00000747675 lncRNA GM23248 (Cell line)