ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 170.00 20.41 7.28 100.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 12.00 1.44 0.51 60.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 14.00 25.93 0.60 100.0 SNHG10-212 lncRNA GM23248 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 219.05 14.16 9.38 20.74 SNHG19-202 lncRNA GM23248 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 1178.16 76.16 50.44 85.5 SNHG19-202 lncRNA GM23248 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 3717.00 26.81 159.14 80.54 MIR222HG-206 lncRNA GM23248 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 7873.00 56.79 337.07 100.0 MIR222HG-206 lncRNA GM23248 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 517.00 3.73 22.13 100.0 MIR222HG-206 lncRNA GM23248 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 15.00 6.22 0.64 100.0 MIR99AHG-370 lncRNA GM23248 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 214.00 88.80 9.16 99.53 MIR99AHG-370 lncRNA GM23248 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 144.00 97.30 6.17 100.0 HPS4-237 retained intron GM23248 (Cell line)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 68.00 81.93 2.91 100.0 MEG8-253 lncRNA GM23248 (Cell line)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 16.00 34.04 0.69 100.0 MEG9-206 lncRNA GM23248 (Cell line)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 6.00 12.77 0.26 100.0 MEG9-206 lncRNA GM23248 (Cell line)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 2.00 4.26 0.09 100.0 MEG9-206 lncRNA GM23248 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 51.00 11.72 2.18 100.0 DNAJC5-203 nonsense mediated decay GM23248 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 43.00 13.03 1.84 100.0 ENST00000707189 TEC GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 3.00 0.18 0.13 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 788.86 48.07 33.77 54.78 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 1.00 0.06 0.04 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 6.00 0.37 0.26 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 733.87 44.72 31.42 47.97 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 17.00 1.04 0.73 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 2.00 0.12 0.09 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 13.00 0.79 0.56 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)