ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 3.00 3.70 0.13 100.0 SNHG14-315 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 184.00 2.45 7.88 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 1249.18 16.64 53.48 43.57 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 27.00 0.36 1.16 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 83.00 1.11 3.55 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 1778.05 23.69 76.12 58.64 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 2072.00 27.61 88.71 88.02 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 11.00 0.15 0.47 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 574.00 7.65 24.57 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 13.00 0.17 0.56 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 5.00 0.07 0.21 100.0 SNHG5-273 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 46.00 0.38 1.97 44.23 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 11272.00 92.43 482.59 98.27 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 74.00 0.61 3.17 63.79 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 196.00 1.61 8.39 75.97 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 9.00 0.07 0.39 100.0 MEG8-251 lncRNA GM23248 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 64.00 64.65 2.74 86.49 SNHG14-336 lncRNA GM23248 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 18.00 18.18 0.77 50.0 SNHG14-336 lncRNA GM23248 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 2.00 5.88 0.09 100.0 SNHG14-341 lncRNA GM23248 (Cell line)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 3.00 3.06 0.13 100.0 NCL-211 retained intron GM23248 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 15.00 46.88 0.64 100.0 FMN2-209 protein coding CDS not defined GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 2.00 0.24 0.09 100.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 8.00 0.96 0.34 40.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 125.00 15.01 5.35 100.0 LINC02739-203 lncRNA GM23248 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 164.00 19.69 7.02 100.0 LINC02739-203 lncRNA GM23248 (Cell line)