ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 7.00 0.35 0.30 29.17 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 257.00 12.95 11.00 89.86 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 284.00 14.31 12.16 100.0 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 182.00 5.23 7.79 100.0 GNL3-211 retained intron GM23248 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3052.00 87.70 130.67 100.0 GNL3-211 retained intron GM23248 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 3.00 5.45 0.13 100.0 RPL5-205 retained intron GM23248 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 30.00 54.55 1.28 100.0 RPL5-205 retained intron GM23248 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 212.00 36.81 9.08 100.0 ZBED9-AS1-201 lncRNA GM23248 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 854.00 90.85 36.56 100.0 RPS3A-206 retained intron GM23248 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 2916.00 97.75 124.84 100.0 COX7C-203 protein coding GM23248 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 6.00 0.21 0.26 100.0 RACK1-229 protein coding GM23248 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 64.00 2.28 2.74 76.19 RACK1-229 protein coding GM23248 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 539.66 19.22 23.10 24.95 RACK1-229 protein coding GM23248 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 1934.08 68.88 82.80 76.66 RACK1-229 protein coding GM23248 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 7017.00 65.09 300.42 94.45 RACK1-230 retained intron GM23248 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 3599.00 33.39 154.09 71.61 RACK1-230 retained intron GM23248 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 99.00 96.12 4.24 100.0 SCARNA5-201 scaRNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 1156.00 15.00 49.49 87.64 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 2.00 0.03 0.09 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 402.00 5.22 17.21 60.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 107.00 1.39 4.58 56.61 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 289.00 3.75 12.37 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 574.00 7.45 24.57 85.54 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 57.00 0.74 2.44 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 196.00 2.54 8.39 71.01 RNY4-201 misc RNA GM23248 (Cell line)