ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 74.00 90.24 3.17 100.0 MIR889-201 miRNA GM23248 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 7.00 50.00 0.30 100.0 SNORD111-201 snoRNA GM23248 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 2.00 7.69 0.09 100.0 SNORD88A-201 snoRNA GM23248 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 10.00 90.91 0.43 100.0 MIR548K-201 miRNA GM23248 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 11.00 64.71 0.47 100.0 MIR320B2-201 miRNA GM23248 (Cell line)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 1.00 100.00 0.04 100.0 MIR1271-201 miRNA GM23248 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 10.00 0.14 0.43 100.0 SNORD100-201 snoRNA GM23248 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 21.00 0.29 0.90 100.0 SNORD100-201 snoRNA GM23248 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 6963.00 96.12 298.11 100.0 SNORD100-201 snoRNA GM23248 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 77.00 1.06 3.30 100.0 SNORD100-201 snoRNA GM23248 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 126.00 58.88 5.39 100.0 SNORD111B-201 snoRNA GM23248 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 39.00 32.77 1.67 100.0 RNU2-36P-201 snRNA GM23248 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 4.00 3.36 0.17 100.0 RNU2-36P-201 snRNA GM23248 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 49.00 0.19 2.10 100.0 SNORD19C-201 snoRNA GM23248 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 25322.00 96.48 1084.12 98.15 SNORD19C-201 snoRNA GM23248 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 12559.00 87.32 537.69 99.99 SNORD12B-201 snoRNA GM23248 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1198.00 8.33 51.29 100.0 SNORD12B-201 snoRNA GM23248 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 13.00 0.09 0.56 100.0 SNORD12B-201 snoRNA GM23248 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 46.00 28.40 1.97 100.0 Y_RNA.609-201 misc RNA GM23248 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 3.00 37.50 0.13 100.0 Y_RNA.612-201 misc RNA GM23248 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 46.00 1.12 1.97 100.0 SNORD71-201 snoRNA GM23248 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 50.00 1.22 2.14 100.0 SNORD71-201 snoRNA GM23248 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 3934.00 95.86 168.43 99.34 SNORD71-201 snoRNA GM23248 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 60.00 82.19 2.57 88.24 MIR194-2HG-201 lncRNA GM23248 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 11.00 15.07 0.47 73.33 MIR194-2HG-201 lncRNA GM23248 (Cell line)