ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 265.00 0.02 1.82 100.0 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 605442.91 54.06 4166.31 58.28 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 560563.40 50.05 3857.47 50.44 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 2599.00 0.23 17.88 76.26 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 316.00 0.03 2.17 100.0 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 5.00 0.00 0.03 100.0 C19orf48P-203 retained intron A375 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 164.00 23.84 1.13 100.0 RPS11-206 retained intron A375 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 455.00 66.13 3.13 100.0 RPS11-206 retained intron A375 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 16.00 76.19 0.11 76.19 CARMN-209 lncRNA A375 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 480.00 50.90 3.30 100.0 ENST00000602478 lncRNA A375 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 2.00 5.41 0.01 100.0 PPFIA1P1-201 processed pseudogene A375 (Cell line)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 3.00 50.00 0.02 100.0 SNORD114-21-201 snoRNA A375 (Cell line)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 1.00 16.67 0.01 100.0 SNORD114-21-201 snoRNA A375 (Cell line)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 1.00 100.00 0.01 100.0 SNORD115-40-201 snoRNA A375 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 256.00 99.22 1.76 100.0 MIR98-201 miRNA A375 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 31.00 91.18 0.21 100.0 MIR15A-201 miRNA A375 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 85.00 51.83 0.58 100.0 SNHG21-206 retained intron A375 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 71.00 61.74 0.49 100.0 SNORD11B-201 snoRNA A375 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 4774.00 87.69 32.85 100.0 SNORD91B-201 snoRNA A375 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 9195.00 80.04 63.27 87.32 SNORD91A-201 snoRNA A375 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 14.00 38.89 0.10 100.0 MIR486-1-201 miRNA A375 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 6866.00 16.24 47.25 29.32 NOP56-219 retained intron A375 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 476.00 1.13 3.28 100.0 NOP56-219 retained intron A375 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 230.00 0.54 1.58 100.0 NOP56-219 retained intron A375 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 13316.00 31.49 91.63 97.89 NOP56-219 retained intron A375 (Cell line)