ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1554.00 0.55 10.69 21.05 RPL17-211 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 2244.00 0.79 15.44 12.63 RPL17-211 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 300.00 0.11 2.06 100.0 RPL17-211 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 195923.00 69.31 1348.23 99.33 RPL17-211 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 79404.00 28.09 546.41 98.84 RPL17-211 retained intron A375 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1865.00 5.11 12.83 100.0 RPL17-214 retained intron A375 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 12201.80 33.45 83.97 41.02 RPL17-214 retained intron A375 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 21026.81 57.63 144.69 63.27 RPL17-214 retained intron A375 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 18.00 0.00 0.12 100.0 SNORD43-201 snoRNA A375 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 560256.00 99.53 3855.36 99.87 SNORD43-201 snoRNA A375 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 114.00 0.02 0.78 100.0 SNORD43-201 snoRNA A375 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 17.00 100.00 0.12 100.0 MIR151B-201 miRNA A375 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 217.00 1.92 1.49 100.0 SNORD3A-201 snoRNA A375 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 2390.00 86.03 16.45 100.0 SNORD92-201 snoRNA A375 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 386.00 44.22 2.66 100.0 NSRP1-214 protein coding A375 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 292.00 33.45 2.01 76.84 NSRP1-214 protein coding A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 853.00 31.55 5.87 100.0 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 209.00 7.73 1.44 82.28 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 849.00 31.40 5.84 95.82 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 94.00 3.48 0.65 91.26 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 26.00 0.96 0.18 44.07 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 7.00 53.85 0.05 100.0 ODAD3-204 nonsense mediated decay A375 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 2198.00 11.14 15.13 100.0 VMP1-217 retained intron A375 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 153.00 0.78 1.05 100.0 VMP1-217 retained intron A375 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 14486.00 73.40 99.68 85.7 VMP1-217 retained intron A375 (Cell line)