ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 186.00 0.38 1.28 100.0 NOP56-217 protein coding CDS not defined A375 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 47528.00 96.19 327.06 99.03 NOP56-217 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 177961.00 91.98 1224.63 97.65 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 964.00 0.50 6.63 100.0 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 4303.00 2.22 29.61 80.21 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 9.00 0.00 0.06 23.68 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 609.00 0.31 4.19 100.0 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 38.00 0.02 0.26 100.0 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 29.00 0.01 0.20 76.32 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 127.00 1.08 0.87 100.0 GNL3-211 retained intron A375 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 11296.00 95.79 77.73 100.0 GNL3-211 retained intron A375 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 887.00 73.92 6.10 100.0 RPL5-205 retained intron A375 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 47.00 3.92 0.32 100.0 RPL5-205 retained intron A375 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 228.00 31.58 1.57 100.0 ZBED9-AS1-201 lncRNA A375 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1467.00 84.94 10.10 100.0 RPS3A-206 retained intron A375 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 5192.00 98.11 35.73 100.0 COX7C-203 protein coding A375 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 27369.26 65.69 188.34 68.93 RACK1-229 protein coding A375 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 12176.74 29.23 83.79 29.99 RACK1-229 protein coding A375 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 37.00 0.09 0.25 64.91 RACK1-229 protein coding A375 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 7.00 0.02 0.05 100.0 RACK1-229 protein coding A375 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 49097.00 28.98 337.86 67.76 RACK1-230 retained intron A375 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 118010.00 69.67 812.08 78.25 RACK1-230 retained intron A375 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 89.00 7.47 0.61 100.0 RNA5SP486-201 rRNA pseudogene A375 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 64.00 88.89 0.44 100.0 SCARNA5-201 scaRNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 173.00 0.34 1.19 81.22 RNY4-201 misc RNA A375 (Cell line)