ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 8.00 47.06 0.06 100.0 MIR501-201 miRNA A375 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 155.00 86.11 1.07 100.0 MIR769-201 miRNA A375 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 48.00 64.86 0.33 100.0 KRTAP19-1-201 protein coding A375 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 30.00 100.00 0.21 100.0 MIR301B-201 miRNA A375 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 185.00 62.50 1.27 79.74 RNU1-82P-201 snRNA A375 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 173.00 36.04 1.19 100.0 SNORD66-201 snoRNA A375 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 48.00 10.00 0.33 64.0 SNORD66-201 snoRNA A375 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 47.00 9.79 0.32 100.0 SNORD66-201 snoRNA A375 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 1.00 0.21 0.01 100.0 SNORD66-201 snoRNA A375 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 70.00 79.55 0.48 100.0 U3.17-201 snoRNA A375 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 215.00 36.07 1.48 100.0 SNORD17-201 snoRNA A375 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 747.00 44.84 5.14 100.0 SNORD72-201 snoRNA A375 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1012.00 73.92 6.96 100.0 SNORD70B-201 snoRNA A375 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 108.00 30.77 0.74 83.08 RNY4P18-201 misc RNA A375 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 1843.00 50.37 12.68 100.0 SNORD90-201 snoRNA A375 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1268.00 34.65 8.73 73.59 SNORD90-201 snoRNA A375 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 35971.00 97.53 247.53 100.0 SNORD69-201 snoRNA A375 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 81.00 0.22 0.56 100.0 SNORD69-201 snoRNA A375 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 107.00 0.29 0.74 100.0 SNORD69-201 snoRNA A375 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 56.00 0.15 0.39 100.0 SNORD69-201 snoRNA A375 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1431.00 61.44 9.85 89.55 SNORD70-201 snoRNA A375 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 208.00 2.59 1.43 100.0 B4GALNT2-202 protein coding A375 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 6709.00 83.58 46.17 90.63 B4GALNT2-202 protein coding A375 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 53.00 89.83 0.36 100.0 NDE1-202 protein coding A375 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 1.00 100.00 0.01 100.0 MIR450B-201 miRNA A375 (Cell line)