ENCFF023EVA
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | A375 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR376XXO |
| Description: | Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 2109.00 | 6.09 | 14.51 | 83.72 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 121.00 | 0.35 | 0.83 | 100.0 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 1880.00 | 5.43 | 12.94 | 64.78 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_56_+ | 1–56 | 135.00 | 0.39 | 0.93 | 100.0 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 7.00 | 0.02 | 0.05 | 100.0 | MT-TY-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387419.1 | ENST00000387419.1_1_51_+ | 1–51 | 7.00 | 14.89 | 0.05 | 100.0 | MT-TD-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_58_+ | 1–58 | 1134.00 | 36.82 | 7.80 | 100.0 | MT-TK-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_52_+ | 1–52 | 651.00 | 21.14 | 4.48 | 100.0 | MT-TK-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_28_+ | 1–28 | 43.00 | 1.40 | 0.30 | 100.0 | MT-TK-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_31_+ | 1–31 | 2.00 | 0.06 | 0.01 | 100.0 | MT-TK-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_53_+ | 1–53 | 92.00 | 14.11 | 0.63 | 100.0 | MT-TS2-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_20_+ | 1–20 | 73.00 | 11.20 | 0.50 | 86.9 | MT-TS2-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_26_+ | 1–26 | 35.00 | 5.37 | 0.24 | 100.0 | MT-TS2-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387456.1 | ENST00000387456.1_1_31_+ | 1–31 | 70.00 | 24.31 | 0.48 | 100.0 | MT-TL2-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_62_+ | 1–62 | 226.00 | 0.03 | 1.56 | 74.34 | MT-TE-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_57_+ | 1–57 | 93.00 | 0.01 | 0.64 | 100.0 | MT-TE-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_13_67_+ | 13–67 | 21.00 | 0.00 | 0.14 | 100.0 | MT-TE-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_40_67_+ | 40–67 | 18.00 | 0.00 | 0.12 | 12.16 | MT-TE-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_69_+ | 1–69 | 710177.00 | 91.40 | 4887.03 | 94.43 | MT-TE-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_39_69_+ | 39–69 | 130.00 | 0.02 | 0.89 | 92.2 | MT-TE-201 | Mt tRNA | A375 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_24_69_+ | 24–69 | 183.00 | 0.02 | 1.26 | 100.0 | MT-TE-201 | Mt tRNA | A375 (Cell line) |
| ENST00000388006.1 | ENST00000388006.1_7_28_+ | 7–28 | 83.00 | 76.85 | 0.57 | 100.0 | MIR196A1-201 | miRNA | A375 (Cell line) |
| ENST00000389680.2 | ENST00000389680.2_2_90_+ | 2–90 | 68.00 | 3.13 | 0.47 | 100.0 | MT-RNR1-201 | Mt rRNA | A375 (Cell line) |
| ENST00000389680.2 | ENST00000389680.2_316_354_+ | 316–354 | 95.00 | 4.38 | 0.65 | 100.0 | MT-RNR1-201 | Mt rRNA | A375 (Cell line) |
| ENST00000390180.1 | ENST00000390180.1_64_86_+ | 64–86 | 21.00 | 38.18 | 0.14 | 100.0 | MIR454-201 | miRNA | A375 (Cell line) |