ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 96843.00 86.99 674.88 100.0 SNORD6-201 snoRNA Karpas-422 (Cell line)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 150.00 2.63 1.05 100.0 RNY3-201 misc RNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 2144.00 8.33 14.94 95.33 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1789.00 6.95 12.47 100.0 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 1395.00 5.42 9.72 100.0 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 3490.00 13.56 24.32 85.79 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 5155.08 20.03 35.92 61.49 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 3628.43 14.09 25.29 43.28 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1995.00 7.75 13.90 100.0 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 3301.00 95.54 23.00 97.26 MIR146B-201 miRNA Karpas-422 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 155.00 9.76 1.08 100.0 SNHG20-201 lncRNA Karpas-422 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 130.00 6.13 0.91 100.0 ATP5MK-205 protein coding Karpas-422 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 369.00 17.41 2.57 100.0 ATP5MK-205 protein coding Karpas-422 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 9.00 5.06 0.06 100.0 LINC01556-201 lncRNA Karpas-422 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 211.00 57.34 1.47 100.0 ATAD3A-202 protein coding Karpas-422 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 89.00 23.99 0.62 68.99 TMC5-202 protein coding Karpas-422 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 1435.00 79.90 10.00 100.0 ZMYM2-203 protein coding Karpas-422 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 77.00 0.34 0.54 100.0 RNVU1-7-201 snRNA Karpas-422 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 20817.00 89.96 145.07 100.0 SNORD24-201 snoRNA Karpas-422 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 17008.00 93.33 118.53 100.0 Y_RNA.389-201 misc RNA Karpas-422 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 9289.00 4.55 64.73 69.74 SNORD101-201 snoRNA Karpas-422 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 181776.00 89.02 1266.76 98.98 SNORD101-201 snoRNA Karpas-422 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 407.00 0.20 2.84 100.0 SNORD101-201 snoRNA Karpas-422 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 392.00 0.19 2.73 100.0 SNORD101-201 snoRNA Karpas-422 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 199791.00 95.97 1392.30 100.0 SNORD37-201 snoRNA Karpas-422 (Cell line)