ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 131.00 1.12 0.91 100.0 RNA5SP141-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 7153.00 72.64 49.85 100.0 ENST00000364722 snoRNA Karpas-422 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 4452.00 54.37 31.03 100.0 SNORD52-201 snoRNA Karpas-422 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 370.00 14.86 2.58 47.01 SNORD117-201 snoRNA Karpas-422 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 417.00 16.75 2.91 53.88 SNORD117-201 snoRNA Karpas-422 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 1.00 100.00 0.01 100.0 SNORD114-3-201 snoRNA Karpas-422 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 24.00 0.18 0.17 100.0 RNA5SP298-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 1.00 3.85 0.01 100.0 SNORD115-10-201 snoRNA Karpas-422 (Cell line)
ENST00000365099.1 ENST00000365099.1_2_82_+ 2–82 1.00 25.00 0.01 100.0 SNORD115-20-201 snoRNA Karpas-422 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 245.00 0.56 1.71 100.0 SNORD38A-201 snoRNA Karpas-422 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 39481.00 90.13 275.14 100.0 SNORD38A-201 snoRNA Karpas-422 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 1580.00 3.61 11.01 100.0 SNORD38A-201 snoRNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 52654.00 6.09 366.94 99.02 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 30451.00 3.52 212.21 47.27 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 204.00 0.02 1.42 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 8324.00 0.96 58.01 38.31 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 1465.00 0.17 10.21 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 223243.00 25.83 1555.74 86.79 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 12898.00 1.49 89.88 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 11952.00 1.38 83.29 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 9117.00 1.05 63.53 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 20.00 8.23 0.14 100.0 SNORD14C-201 snoRNA Karpas-422 (Cell line)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 6.00 19.35 0.04 100.0 SNORD115-44-201 snoRNA Karpas-422 (Cell line)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 674.00 36.67 4.70 100.0 RNA5SP77-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 2573.00 2.31 17.93 100.0 SNORD6-201 snoRNA Karpas-422 (Cell line)