ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 28634.00 72.10 199.54 96.04 SNORD59A-201 snoRNA Karpas-422 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 15.00 2.42 0.10 100.0 SNORA7B-201 snoRNA Karpas-422 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 850.00 71.25 5.92 100.0 SNORD14D-201 snoRNA Karpas-422 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 986.00 9.12 6.87 100.0 Y_RNA.555-201 misc RNA Karpas-422 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 21262.00 92.02 148.17 93.8 MIR25-201 miRNA Karpas-422 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 689.00 86.89 4.80 91.62 MIR99B-201 miRNA Karpas-422 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 107.00 39.78 0.75 84.25 MIR23B-201 miRNA Karpas-422 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 126.00 46.84 0.88 96.92 MIR23B-201 miRNA Karpas-422 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 45.00 73.77 0.31 95.74 MIR199B-201 miRNA Karpas-422 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 7.00 11.48 0.05 100.0 MIR199B-201 miRNA Karpas-422 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 5970.00 96.54 41.60 100.0 MIR30B-201 miRNA Karpas-422 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 6.00 31.58 0.04 100.0 MIR181D-201 miRNA Karpas-422 (Cell line)
ENST00000384857.1 ENST00000384857.1_61_83_+ 61–83 1.00 100.00 0.01 100.0 MIR508-201 miRNA Karpas-422 (Cell line)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 82.00 90.11 0.57 100.0 MIR215-201 miRNA Karpas-422 (Cell line)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 186810.00 99.04 1301.84 99.7 MIR191-201 miRNA Karpas-422 (Cell line)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 1.00 7.69 0.01 100.0 MIR181C-201 miRNA Karpas-422 (Cell line)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 7.00 53.85 0.05 87.5 MIR181C-201 miRNA Karpas-422 (Cell line)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 343.00 96.89 2.39 100.0 MIR194-1-201 miRNA Karpas-422 (Cell line)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 1997.00 71.07 13.92 73.2 MIR128-2-201 miRNA Karpas-422 (Cell line)
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 1.00 100.00 0.01 100.0 MIR99A-201 miRNA Karpas-422 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 152.00 0.56 1.06 100.0 MIR28-201 miRNA Karpas-422 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 24282.00 89.52 169.22 96.59 MIR28-201 miRNA Karpas-422 (Cell line)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 1338.00 4.93 9.32 85.55 MIR28-201 miRNA Karpas-422 (Cell line)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 7712.00 72.62 53.74 100.0 MIR183-201 miRNA Karpas-422 (Cell line)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 40573.00 97.09 282.75 98.54 MIR186-201 miRNA Karpas-422 (Cell line)