ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 39.00 5.77 0.27 73.58 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 5.00 55.56 0.03 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 157.00 0.30 1.09 54.9 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 129.00 0.25 0.90 45.1 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 17391.00 33.74 121.19 49.21 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 936.00 10.74 6.52 66.52 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 3194.71 36.65 22.26 89.21 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 745.24 8.55 5.19 21.89 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 42915.00 83.28 299.07 88.17 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 9.00 0.68 0.06 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 1018.00 12.30 7.09 69.06 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 1072.00 3.12 7.47 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 754.00 0.38 5.25 33.77 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 116.00 1.52 0.81 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 160.00 5.71 1.12 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 20500.00 50.76 142.86 78.39 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 24.00 0.07 0.17 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 5260.00 15.42 36.66 62.79 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 21.00 10.82 0.15 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 39.00 2.59 0.27 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 16.00 0.35 0.11 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 655.00 54.67 4.56 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 105.00 44.12 0.73 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 17556.00 55.33 122.34 91.71 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 509.00 1.60 3.55 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA Karpas-422 (Cell line)