ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 10.00 0.13 0.07 24.39 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 846.00 10.61 5.90 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 33.00 0.41 0.23 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 2189.00 27.47 15.25 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 277.00 0.03 1.93 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 140.00 8.73 0.98 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 352.00 32.62 2.45 93.37 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 25.00 2.32 0.17 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 25.00 2.32 0.17 6.63 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 882.00 16.46 6.15 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 39.00 0.73 0.27 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 89.00 15.95 0.62 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 479.00 79.04 3.34 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 125.00 33.42 0.87 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 738.00 2.26 5.14 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 220.00 0.68 1.53 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 165.00 0.51 1.15 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 75.00 0.23 0.52 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 10.00 0.03 0.07 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 188.00 0.58 1.31 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 44.00 0.01 0.31 77.19 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 49.00 0.01 0.34 60.49 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 4536.00 0.55 31.61 96.51 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 889.00 15.34 6.20 62.74 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 11538.00 87.78 80.41 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA Karpas-422 (Cell line)