ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 154.00 0.17 1.07 100.0 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 3009.00 3.37 20.97 99.05 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 5659.00 6.34 39.44 41.97 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 7133.71 8.00 49.71 46.59 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 519.00 0.58 3.62 81.99 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 11282.92 12.65 78.63 27.27 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 34548.69 38.72 240.76 82.69 ENST00000823801 lncRNA Karpas-422 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 24255.00 11.47 169.03 100.0 GAS5-377 lncRNA Karpas-422 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 288.00 0.14 2.01 100.0 GAS5-377 lncRNA Karpas-422 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 549.00 0.26 3.83 100.0 GAS5-377 lncRNA Karpas-422 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 181525.00 85.83 1265.01 100.0 GAS5-377 lncRNA Karpas-422 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 5757.00 26.19 40.12 100.0 TAF12-DT-204 lncRNA Karpas-422 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 114.00 0.14 0.79 100.0 ZFAS1-238 lncRNA Karpas-422 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 77181.00 91.83 537.86 99.72 ZFAS1-238 lncRNA Karpas-422 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 216.00 0.26 1.51 100.0 ZFAS1-238 lncRNA Karpas-422 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 2049.00 2.44 14.28 100.0 ZFAS1-238 lncRNA Karpas-422 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 542.00 4.67 3.78 100.0 ZFAS1-242 lncRNA Karpas-422 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 10364.00 89.22 72.22 100.0 ZFAS1-242 lncRNA Karpas-422 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 211.00 39.44 1.47 100.0 ENST00000837997 lncRNA Karpas-422 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 110.00 20.56 0.77 100.0 ENST00000837997 lncRNA Karpas-422 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 577.00 74.84 4.02 86.12 ENST00000839036 lncRNA Karpas-422 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 88.00 16.76 0.61 100.0 ENST00000849527 lncRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 50.00 0.29 0.35 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 13665.00 78.05 95.23 91.2 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 283.00 0.70 1.97 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA Karpas-422 (Cell line)