ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 891.00 0.08 6.21 100.0 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 987233.00 93.52 6879.83 94.6 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 84.00 0.01 0.59 100.0 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 105.60 0.01 0.74 51.26 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 232.75 0.02 1.62 66.5 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 155.63 0.01 1.08 31.44 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 3664.00 0.35 25.53 97.63 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 155.00 0.01 1.08 100.0 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 370.00 91.81 2.58 95.61 MIR155HG-205 lncRNA Karpas-422 (Cell line)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 2918.00 28.46 20.33 100.0 ENST00000785178 lncRNA Karpas-422 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 2741.00 34.14 19.10 65.09 ENST00000786284 lncRNA Karpas-422 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 940.00 11.71 6.55 100.0 ENST00000786284 lncRNA Karpas-422 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 1470.00 18.31 10.24 85.02 ENST00000786284 lncRNA Karpas-422 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 48783.00 82.69 339.96 92.09 ENST00000788343 lncRNA Karpas-422 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 4746.34 18.61 33.08 35.85 ENST00000797550 lncRNA Karpas-422 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 4990.65 19.57 34.78 37.7 ENST00000797550 lncRNA Karpas-422 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 7228.00 28.34 50.37 98.64 ENST00000797550 lncRNA Karpas-422 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 136705.00 90.34 952.67 96.58 MIR181A1HG-212 lncRNA Karpas-422 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 328.00 0.22 2.29 100.0 MIR181A1HG-212 lncRNA Karpas-422 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 5563.00 46.41 38.77 100.0 C19orf48P-218 lncRNA Karpas-422 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 3645.00 30.41 25.40 100.0 C19orf48P-218 lncRNA Karpas-422 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 258.00 23.45 1.80 100.0 ENST00000817026 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 599.00 0.67 4.17 100.0 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 1839.48 2.06 12.82 29.17 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 3232.04 3.62 22.52 36.1 ENST00000823279 lncRNA Karpas-422 (Cell line)