ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 19.00 0.52 0.13 73.08 SNHG14-323 lncRNA Karpas-422 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 344.00 19.78 2.40 87.31 SNHG14-336 lncRNA Karpas-422 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 214.00 12.31 1.49 44.31 SNHG14-336 lncRNA Karpas-422 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 299.00 23.07 2.08 92.28 SNHG14-341 lncRNA Karpas-422 (Cell line)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 28.00 0.69 0.20 100.0 NCL-211 retained intron Karpas-422 (Cell line)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2.00 0.16 0.01 100.0 NCL-216 retained intron Karpas-422 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 17011.00 70.54 118.55 100.0 FMN2-209 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 79.00 0.24 0.55 100.0 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 66.00 0.20 0.46 42.58 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 159.00 0.48 1.11 100.0 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 4265.00 12.93 29.72 100.0 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 18885.00 57.27 131.61 100.0 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 89.00 0.27 0.62 57.42 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 129.00 1.29 0.90 100.0 SNHG10-212 lncRNA Karpas-422 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 67902.39 87.51 473.20 94.15 SNHG19-202 lncRNA Karpas-422 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 4532.19 5.84 31.58 11.55 SNHG19-202 lncRNA Karpas-422 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1.86 0.00 0.01 93.24 SNHG19-202 lncRNA Karpas-422 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1.44 0.00 0.01 72.05 SNHG19-202 lncRNA Karpas-422 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 1.00 16.67 0.01 100.0 MIR222HG-206 lncRNA Karpas-422 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 15.00 0.74 0.10 100.0 RPSA-216 retained intron Karpas-422 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 64.00 77.11 0.45 100.0 MIR99AHG-370 lncRNA Karpas-422 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 11.00 13.25 0.08 100.0 MIR99AHG-370 lncRNA Karpas-422 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 11708.00 95.83 81.59 100.0 HPS4-237 retained intron Karpas-422 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1972.00 11.02 13.74 100.0 DNAJC5-203 nonsense mediated decay Karpas-422 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 362.00 8.41 2.52 100.0 ENST00000707189 TEC Karpas-422 (Cell line)